User Guide for the PSLab Remote-Access Framework

The remote-lab framework of the pocket science lab has been designed to enable user to access their devices remotely via the internet. The pslab-remote repository includes an API server built with Python-Flask and a webapp that uses EmberJS. This post is a guide for users who wish to test the framework. A series of blog posts have been previously written which have explored and elaborated various aspect of the remote-lab such as designing the API server, remote execution of function strings, automatic deployment on various domains etc. In this post, we shall explore how to execute function strings, execute example scripts, and write a script ourselves.

A live demo is hosted at pslab-remote.surge.sh . The API server is hosted at pslab-stage.herokuapp.com, and an API reference which is being developed can be accessed at pslab-stage.herokuapp.com/apidocs . A screencast of the remote lab is also available

Create an account

Signing up at this point is very straightforward, and does not include any third party verification tools since the framework is under active development, and cannot be claimed to be ready for release yet.

Click on the sign-up button, and provide a username, email, and password. The e-mail will be used as the login-id, and needs to be unique.

Login to the remote lab

Use the email-id used for signing up, enter the password, and the app will redirect you to your new home-page, where you will be greeted with a similar screen.

Your home-page

On the home-page, you will find that the first section includes a text box for entering a function string, and an execute button. Here, you can enter any valid PSLab function such as `get_resistance()` , and click on the execute button in order to run the function on the PSLab device connected to the API server, and view the results. A detailed blog post on this process can be found here.

Since this is a new account, no saved scripts are present in the Your Scripts section. We will come to that shortly, but for now, there are some pre-written example scripts that will let you test them as well as view their source code in order to copy into your own collection, and modify them.

Click on the play icon next to `multimeter.py` in order to run the script. The eye icon to the right of the row enables you to view the source code, but this can also be done while the app is running. The multimeter app looks something like this, and you can click on the various buttons to try them out.

You may also click on the Source Code tab in order to view the source

Create and execute a small python script

We can now try to create a simple script of our own. Click on the `New Python Script` button in the top-bar to navigate to a page that will allow you to create and save your own scripts. We shall write a small 3-line code to print some sinusoidal coordinates, save it, and test it. Copy the following code for a sine wave with 30 points, and publish your script.

import numpy as np
x=np.linspace(0,2*np.pi,30)
print (x, np.sin(x))

Create a button widget and associate a callback to the get_voltage function

A small degree of object oriented capabilities have also been added, and the pslab-remote allows you to create button widgets and associate their targets with other widgets and labels.
The multimeter demo script uses this feature, and a single line of code suffices to demonstrate this feature.

button('Voltage on CH1 >',"get_voltage('CH1')","display_number")

You can copy the above line into a new script in order to try it out.

Associate a button’s callback to the capture routines, and set the target as a plot

The callback target for a button can be set to point to a plot. This is useful if the callback involves arrays such as those returned by the capture routines.

Example code to show a sine wave in a plot, and make button which will replace it with captured data from the oscilloscope:

import numpy as np
x=np.linspace(0,2*np.pi,30)
plt = plot(x, np.sin(x))
button('capture 1',"capture1('CH1',100,10)","update-plot",target=plt)
Figure: Demo animation from the plot_test example. Capture1 is connected to the plot shown.
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Creating an Elementary Oscilloscope in PSLab’s Remote Framework

The last couple of blog posts explained how we could put together the versatility of ember components, the visual appeal of jqplot, the flexibility of Python Flask, and the simplicity of Python itself in order to make simple scripts for PSLab that would could be run on a server by a remote client anywhere on the web. We have also seen how callbacks could be assigned to widgets created in these scripts in order to make object oriented applications. In this blog post, we shall see how to assign a capture method to a button, and update a plot with the received data. It will also demonstrate how to use ember-lodash to perform array manipulations.

Specifying the return data type in the callback success routine

For a more instructive write-up on assigning callbacks, please refer to these posts .

Whenever the callback assigned to a button is a function that returns an array of elements, and the target for the resultant data is a plot, the stacking order of the returned array must be specified in order to change its shape to suit the plotting library. The default return data from a capture routine (oscilloscope) is made up of separate arrays for X coordinate and Y coordinate values. Since JQplot requires [X,Y] pairs , we must specify a stacking order of ‘xy’ so that the application knows that it must convert them to pairs (using lodash/zip)  before passing the result to the plot widget. Similarly, different stacking orders for capture2, and capture4 must also be defined.

Creating an action that performs necessary array manipulations and plots the received data

It can be seen from the excerpt below, that if the onSuccess target for a callback is specified to be a plot in the actionDefinition object, then the stacking order is checked, and the returned data is modified accordingly

Relevant excerpt from controllers/user-home.js/runButtonAction

if (actionDefinition.success.type === 'update-plot') {
  if (actionDefinition.success.stacking === 'xy') {
    $.jqplot(actionDefinition.success.target, [zip(...resultValue)]).replot();
  } else if (actionDefinition.success.stacking === 'xyy') {
    $.jqplot(actionDefinition.success.target, [zip(...[resultValue[0], resultValue[1]]), zip(...[resultValue[0], resultValue[2]])]).replot();
  } else if (actionDefinition.success.stacking === 'xyyyy') {
    $.jqplot(actionDefinition.success.target, [zip(...[resultValue[0], resultValue[1]]), zip(...[resultValue[0], resultValue[2]]), zip(...[resultValue[0], resultValue[3]]), zip(...[resultValue[0], resultValue[4]])]).replot();
  } else {
    $.jqplot(actionDefinition.success.target, resultValue).replot();
  }
}

 

With the above framework in place, we can add a plot with the line plt = plot(x, np.sin(x)) , and associate a button with a capture routine that will update its contents with a single line of code: button(‘capture1’,”capture1(‘CH1’,100,10)”,”update-plot”,target=plt)

Final Result

The following script created on the pslab-remote platform makes three buttons and plots, and sets the buttons to invoke capture1, capture2, and capture4 respectively when clicked.

import numpy as np
x=np.linspace(0,2*np.pi,30)
plt = plot(x, np.sin(x))
button('capture 1',"capture1('CH1',100,10)","update-plot",target=plt)

plt2 = plot(x, np.sin(x))
button('capture 2',"capture2(50,10)","update-plot",target=plt2,stacking='xyy')

plt3 = plot(x, np.sin(x))
button('capture 4',"capture4(50,10)","update-plot",target=plt3,stacking='xyyyy')

 

 

 

 

 

 

 

 

 

 

 

 

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Enhancing the Functionality of User Submitted Scripts in the PSLab-remote framework

The remote-lab framework of the pocket science lab enables users to access their devices remotely via the internet. Its design involves an API server built with Python-Flask and a webapp that uses EmberJS. This post is the latest in a series of blog posts which have explored and elaborated various aspect of the remote-lab such as designing the API server and testing with Postman, remote execution of function strings, automatic deployment on various domains etc. It also supports creating and submitting python scripts which will be run on the remote server, and the console output relayed to the webapp.

In this post, we shall take a look at how we can extend the functionality by providing support for object oriented code in user submitted scripts.

Let’s take an example of a Python script where the user wishes to create a button which when clicked will read a voltage via the API server, and display the value to the remote user. Clearly, an interpreter that only provides the console output is not enough for this task. We need the interpreter to generate an app structure that also includes callbacks for widgets such as buttons, and JSON objects are an obvious choice for relaying such a structure to the webapp.

In a nutshell, we had earlier created an API method that could execute a python script and return a string output, and now we will modify this method to return a JSON encoded structure which will be parsed by the webapp in order to display an output.

Let’s elaborate this with an example : Example.py

print ('testing')
print ('testing some changes..... ')
print_('highlighted print statement')

 

JSON returned by the API [localhost:8000/runScriptById] , for the above script:

{"Date": "Tue, 01 Aug 2017 21:39:12 GMT", "Filename": "example.py", "Id": 4,
 "result": [
  {"name": "print", "type": "span", "value": "('testing',)"},
  {"name": "print", "type": "span", "value": "('testing some changes..... ',)"},
  {"class": "row well", "name": "print", "type": "span", "value": "highlighted print statement"}
  ],
"status": true}
Screenshot of the EmberJS webapp showing the output rendered with the above JSON

Adding Support for Widgets

In the previous section, we laid the groundwork for a flexible platform. Instead of returning a string, the webapp accepts a JSON object and parses it. We shall now add support for a clickable button which can be associated with a valid PSLab function.

An elementary JS twiddle has been made by Niranjan Rajendran which will help newbies to understand how to render dynamic templates via JSON objects retrieved from APIs. The twiddle uses two API endpoints; one to retrieve the compiled JSON output, and another to act as a voltmeter method which returns a voltage value.

To understand how this works in pslab-remote, consider a one line script called button.py:

button('get voltage',"get_voltage('CH1')")

The objective is to create a button with the text ‘get voltage’ on it , and which when clicked will run the command ‘get_voltage(‘CH1’)’ on the API server, and display the result.

When this script is run on the API server, it returns a JSON object with the following structure:

{"Date": "Tue, 01 Aug 2017 21:39:12 GMT", "Filename": "example.py", "Id": 4,
 "result": [  {"type":"button","name":"button-id0","label":"get_voltage","fetched_value":"","action":{"type":"POST","endpoint":"get_voltage('CH1')","success":{"datapoint":'result',"type":"display_number", "target":"button-id0-label"}}},
  {"name": "button-id0label", "type": "label", "value": ""},
  ],
"status": true}

The above JSON object is parsed by the webapp’s user-home template, and a corresponding button and label are generated. The following section of code from user-home.hbs renders the JSON object

{{#each codeResults as |element|}}
  {{#if (eq element.type 'label')}}
    <label  id="{{element.name}}" class="{{element.class}}">{{element.value}}</label>
  {{/if}}
  {{#if (eq element.type 'button')}}
    <button id="{{element.name}}" {{action 'runButtonAction' element.action}}>{{element.label}}</button>
  {{/if}}
{{/each}}    

An action was also associated with the the created button, and this is the “get_voltage(‘CH1’)” string which we had specified in our one line script.

For the concluding section, we shall see how this action is invoked when the button is clicked, and how the returned value is used to update the contents of the label that was generated as part of this button.

Action defined in controllers/user-home.js :

runButtonAction(actionDefinition) {
  if(actionDefinition.type === 'POST') {
    Ember.$.post('/evalFunctionString',{'function':actionDefinition.endpoint},this,"json")
      .then(response => {
        const resultValue = Ember.get(response, actionDefinition.success.datapoint);
        if (actionDefinition.success.type === 'display_number') {
           Ember.$('#' + actionDefinition.success.target).text(resultValue.toFixed(3));
        }
      });
  }
}

The action string is passed to the evalFunctionString endpoint of the API, and the contents are mapped to the display label.

Screencast of the above process
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Designing A Remote Laboratory With PSLab: execution of function strings

In the previous blog post, we introduced the concept of a ‘remote laboratory’, which would enable users to access the various features of the PSLab via the internet. Many aspects of the project were worked upon, which also involved creation of a web-app using EmberJS that enables users to create accounts , sign in, and prepare Python programs to be sent to the server for execution. A backend APi server based on Python-flask was also developed to handle these tasks, and maintain a postgresql database using sqlalchemy .

The following screencast shows the basic look and feel of the proposed remote lab running in a web browser.

This blog post will deal with implementing a way for the remote user to submit a simple function string, such as get_voltage(‘CH1’), and retrieve the results from the server.

There are three parts to this:
  • Creating a dictionary of the functions available in the sciencelab instance. The user will only be allowed access to these functions remotely, and we may protect some functions as the initialization and destruction routines by blocking them from the remote user
  • Creating an API method to receive a form containing the function string, execute the corresponding function from the dictionary, and reply with JSON data
  • Testing the API using the postman chrome extension
Creating a dictionary of functions :

The function dictionary maps function names against references to the actual functions from an instance of PSL.sciencelab . A simple dictionary containing just the get_voltage function can be generated in the following way:

from PSL import sciencelab
I=sciencelab.connect()
functionList = {'get_voltage':I.get_voltage}

This dictionary is then used with the eval method in order to evaluate a function string:

result = eval('get_voltage('CH1')',functionList)
print (result)
0.0012

A more efficient way to create this list is to use the inspect module, and automatically extract all the available methods into a dictionary

functionList = {}
for a in dir(I):
	attr = getattr(I, a)
	if inspect.ismethod(attr) and a!='__init__':
		functionList[a] = attr

In the above, we have made a dictionary of all the methods except __init__

This approach can also be easily extrapolated to automatically generate a dictionary for inline documentation strings which can then be passed on to the web app.

Creating an API method to execute submitted function strings

We create an API method that accepts a form containing the function string and option that specifies if the returned value is to be formatted as a string or JSON data. A special case arises for numpy arrays which cannot be directly converted to JSON, and the toList function must first be used for them.

@app.route('/evalFunctionString',methods=['POST'])
def evalFunctionString():
    if session.get('user'):
        _stringify=False
        try:
            _user = session.get('user')[1]
            _fn = request.form['function']
            _stringify = request.form.get('stringify',False)
            res = eval(_fn,functionList)
        except Exception as e:
            res = str(e)
        #dump string if requested. Otherwise json array
        if _stringify:
            return json.dumps({'status':True,'result':str(res),'stringified':True})
        else:
            #Try to simply convert the results to json
            try:
                return json.dumps({'status':True,'result':res,'stringified':False})
            # If that didn't work, it's due to the result containing numpy arrays.
            except Exception as e:
                #try to convert the numpy arrays to json using the .toList() function
                try:
                    return json.dumps({'status':True,'result':np.array(res).tolist(),'stringified':False})
                #And if nothing works, return the string
                except Exception as e:
                    print( 'string return',str(e))
                    return json.dumps({'status':True,'result':str(res),'stringified':True})
    else:
        return json.dumps({'status':False,'result':'unauthorized access','message':'Unauthorized access'})
Testing the API using Postman

The postman chrome extension allows users to submit forms to API servers, and view the raw results. It supports various encodings, and is quite handy for testing purposes.Before executing these via the evalFunctionString method, user credentials must first be submitted to the validateLogin method for authentication purposes.

Here are screenshots of the test results from a ‘get_voltage(‘CH1’)’ and ‘capture1(‘CH1’,20,1)’ function executed remotely via postman.

 

Our next steps will be to implement the dialog box in the frontend that will allow users to quickly type in function strings, and fetch the resultant data

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Designing a Remote Laboratory with PSLab using Python Flask Framework

In the introductory post about remote laboratories, a general set of tools to create a framework and handle its various aspects was also introduced. In this blog post, we will explore the implementation of several aspects of the backend app designed with python-flask, and the frontend based on EmberJS. A clear separation of the frontend and backend facilitates minimal disruption of either sections due to the other.

Implementing API methods in Python-Flask

In the Flask web server, page requests are handled via ‘routes’ , which are essentially URLs linked to a python function. Routes are also capable of handling payloads such as POST data, and various return types are also supported.

We shall use an example to demonstrate how a Sign-Up request sent from the sign-up form in the remote lab frontend for PSLab is handled.

@app.route('/signUp',methods=['POST'])
def signUp():
	"""Sign Up for Virtual Lab

	POST: Submit sign-up parameters. The following must be present:
	 inputName : The name of your account. does not need to be unique
	 inputEmail : e-mail ID used for login . must be unique.
	 inputPassword: password .
	Returns HTTP 404 when data does not exist.
	"""
	# read the posted values from the UI
	_name = request.form['inputName']
	_email = request.form['inputEmail']
	_password = request.form['inputPassword']

	# validate the received values
	if _name and _email and _password:
		_hashed_password = generate_password_hash(_password)
		newUser = User(_email, _name,_hashed_password)
		try:
			db.session.add(newUser)
			db.session.commit()
			return json.dumps({'status':True,'message':'User %s created successfully. e-mail:%s !'%(_name,_email)})
		except Exception as exc:
			reason = str(exc)
			return json.dumps({'status':False,'message':str(reason)})

 

In this example, the first line indicates that all URL requests made to <domain:port>/signUp will be handled by the function signUp . During development, we host the server on localhost, and use the default PORT number 8000, so sign-up forms must be submitted to 127.0.0.1:8000/signUp .

For deployment on a globally accessible server, a machine with a static IP, and a DNS record must be used. An example for such a deployment would be the heroku subdomain where pslab-remote is automatically deployed ; https://pslab-stage.herokuapp.com/signUp

A closer look at the above example will tell you that POST data can be accessed via the request.form dictionary, and that the sign-up routine requires inputName,inputEmail, and inputPassword. A password hash is generated before writing the parameters to the database.

Testing API methods using the Postman chrome extension

The route described in the above example requires form data to be submitted along with the URL, and we will use a rather handy developer tool called Postman to help us do this. In the frontend apps , AJAX methods are usually employed to do such tasks as well as handle the response from the server.

 

The above screenshot shows Postman being used to submit form data to /signUp on our API server running at localhost:8000 . The fields inputName, inputDescription, and inputPassword are also posted along with it.

In the bottom section, one can see that the server returned a positive status variable, as well as a descriptive message.

Submitting the sign up form via an Ember controller.
  • Setting up a template
    We first need to set up a template that we shall call sign-up.hbs , and add the following form to it. This form contains the details essential for signing up , and its submit action is linked to an action called `signMeUp` . This action will be defined in the controller which we shall explore shortly

<form class="form-signin" {{action "signMeUp" on="submit"}} >
        <label for="inputName" class="sr-only">Your Name</label>
        {{input value=inputName type="text" name="inputName" id="inputName" class="form-control" placeholder="name" required=true autofocus=true}}
        <label for="inputEmail" class="sr-only">Email address</label>
        {{input value=inputEmail type="email" name="inputEmail" id="inputEmail" class="form-control" placeholder="Email address" required=true autofocus=true}}
        <label for="inputPassword" class="sr-only">Password</label>
        {{input value=inputPassword type="password" name="inputPassword" id="inputPassword" class="form-control" placeholder="Password" required=true autofocus=true}}
         
        <button class="btn btn-lg btn-primary btn-block" type="submit">Sign Up</button>
</form>

 

  • Defining the controller
    The controller contains the actions and variables that the template links to. In this case, we require an action called signMeUp. The success, failure, and error handlers are hidden for clarity.

import Ember from 'ember';
export default Ember.Controller.extend({
  actions:{
    signMeUp() {
        var request = Ember.$.post("/signUp",
 this.getProperties("inputName","inputEmail","inputPassword"),this,'json');
        request.then(this.success.bind(this), this.failure.bind(this),
this.error.bind(this));
    },
  },
});

The signMeUp action submits the contents of the form to the signUp route on the API server, and the results are handled by functions called success, failure, or error depending on the type of response from the backend server.

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Designing A Virtual Laboratory With PSLab

What is a virtual laboratory

A virtual lab interface gives students remote access to equipment in laboratories via the Internet without having to be physically present near the equipment. The idea is that lab experiments can be made accessible to a larger audience which may not have the resources to set up the experiment at their place. Another use-case scenario is that the experiment setup must be placed at a specific location which may not be habitable.

The PSLab’s capabilities can be increased significantly by setting up a framework that allows remote data acquisition and control. It can then be deployed in various test and measurement scenarios such as an interactive environment monitoring station.

What resources will be needed for such a setup

The proposed virtual lab will be platform independent, and should be able to run in web-browsers. This necessitates the presence of a lightweight web-server software running on the hardware to which the PSLab is connected. The web-server must have a framework that must handle multiple connections, and allow control access to only authenticated users.

Proposed design for the backend

The backend framework must be able to handle the following tasks:

  • Communicate with the PSLab hardware attached to the server
  • Host lightweight web-pages with various visual aids
  • Support an authentication framework via a database that contains user credentials
  • Reply with JSON data after executing single commands on the PSLab
  • Execute remotely received python scripts, and relay the HTML formatted output. This should include plots

Proposed design for the frontend

  • Responsive, aesthetic layouts and widget styles.
  • Essential utilities such as Sign-up and Sign-in pages.
  • Embedded plots with basic zooming and panning facilities.
  • Embedded code-editor with syntax highlighting
  • WIdgets to submit the code to the server for execution, and subsequent display of received response.

A selection of tools that can assist with this project, and the purpose they will serve:

Backend

  • The Python communication library for the PSLab
  • FLASK: ‘Flask is a BSD Licensed microframework for Python based on Werkzeug, Jinja 2 and good intentions.’   . It can handle concurrent requests, and will be well suited to serve as our web server
  • MySQL: This is a database management utility that can be used to store user credentials, user scripts, queues etc
  • WerkZeug: The utilities to create and check password hashes are essential for exchanging passwords via the database
  • Json: For relaying measurement results to the client
  • Gunicorn + Nginx: Will be used when more scalable deployment is needed, and the built-in webserver of Flask is unable to handle the load.

Frontend

  • Bootstrap-css: For neatly formatted, responsive UIs
  • Jqplot: A versatile and expandable js based plotting library
  • Ace code editor: A browser based code editor with syntax highlighting, automatic indentation and other user-friendly features. Written in JS
  • Display documentation:  These can be generated server side from Markdown files using Jekyll. Several documentation files are already available from the pslab-desktop-apps, and can be reused after replacing the screenshot images only.

Flow Diagram

Recommended Reading

[1]: Tutorial series  for creating a web-app using python-flask and mysql. This tutorial will be extensively followed for creating the virtual-lab setup.

[2]: Introduction to the Virtual Labs initiative by the Govt of India

[3]: Virtual labs at IIT Kanpur

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